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Table 4 Pathway enrichment analysis of the down-regulated differentially expressed genes

From: Identification of genes associated with methotrexate resistance in methotrexate-resistant osteosarcoma cell lines

Pathway

Term

Name

Count

Gene symbol

p value

KEGG pathway

4110

Cell cycle

21

CCNA2, CCNB1, CCNB2, CCNE2, CDK1, CDKN2C, …

2.35E−09

5322

Systemic lupus erythematosus

15

H2AFX, H2AFY, HIST1H2AE, HIST1H2AM, …

1.07E−04

4114

Oocyte meiosis

13

AURKA, CCNB1, CCNB2, CCNE2, CDK1, FBXO5, …

1.86E−04

4115

p53 signaling pathway

9

CCNB1, CCNB2, CCNE2, CDK1, GADD45G, …

7.05E−04

30

Pentose phosphate pathway

5

ALDOC, DERA, PFKP, PGM1, PRPS1

2.5E−03

4914

Progesterone-mediated oocyte maturation

9

CCNA2, CCNB1, CCNB2, CDK1, PLK1, …

3.7E−03

3030

DNA replication

5

FEN1, LIG1, POLA2, POLE, POLE2

9.0E−03

REACTOME pathway (top ten terms)

1640170

Cell cycle

90

AURKA, AURKB, CCNB1, CCNE2, CDK1, CENPA, CENPH, …

0

2500257

Resolution of sister chromatid cohesion

34

AURKB, CCNB1, CCNB2, CDK1, CENPA, CENPH, …

0

453277

Mitotic M-M/G1 phases

57

AURKB, CCNB1, CCNB2, CDK1, CENPA, CENPH, …

0

68877

Mitotic prometaphase

39

AURKB, CCNB1, CCNB2, CDK1, CENPA, CENPH, …

0

68886

M phase

48

AURKB, CCNB1, CCNB2, CDK1, CENPA, CENPH, …

0

69278

Cell cycle, mitotic

79

AURKA, AURKB, CCNB1, CCNE2, CDK1, CENPA, CENPH, …

0

2555396

Mitotic metaphase and anaphase

38

AURKB, CENPA, CENPH, FBXO5, PLK1, PSMD1, …

1.11E−16

2467813

Separation of sister chromatids

36

AURKB, CENPA, CENPH, PLK1, PSMD1, …

4.44E−16

68882

Mitotic anaphase

37

AURKB, CENPA, CENPH, KIF2C, PSMD1, …

4.44E−16

69275

G2/M transition

23

AURKA, CCNA2, CCNB1, CCNB2, CDK1, PLK1, PLK4, …

6.87E−10

  1. KEGG Kyoto Encyclopedia of Genes and Genomes