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Table 1 The top five terms of Gene Ontology category analysis for the up-regulated differentially expressed genes

From: Identification of genes associated with methotrexate resistance in methotrexate-resistant osteosarcoma cell lines

Category

Term

Name

Counts

Gene symbol

p value

Biological process

GO:0034976

Response to endoplasmic reticulum stress

21

AARS, CCND1, FAM129A, GSK3B, …

3.17E−10

GO:0006418

tRNA aminoacylation for protein translation

12

AARS, PARS2, TARS, YARS, …

3.41E−08

GO:0043038

Amino acid activation

12

AARS, PARS2, TARS, YARS, …

7.23E−08

 

GO:0043039

tRNA aminoacylation

12

AARS, PARS2, TARS, YARS, …

7.23E−08

 

GO:0034620

Cellular response to unfolded protein

14

AARS, CCND1, SERP1, STC2, …

1.35E−06

Molecular function

GO:0004812

Aminoacyl-tRNA ligase activity

12

AARS, PARS2, TARS, YARS, …

6.72E−09

GO:0016875

Ligase activity, forming carbon-oxygen bonds

12

AARS, PARS2, TARS, YARS, …

6.72E−09

GO:0016876

Ligase activity, forming aminoacyl-tRNA and related compounds

12

AARS, PARS2, TARS, YARS, …

6.72E−09

GO:0015175

Neutral amino acid transmembrane transporter activity

7

SLC1A4, SLC1A5, SLC3A2, SLC7A5, …

2.70E−06

GO:0015171

Amino acid transmembrane transporter activity

9

SLC1A4, SLC1A5, SLC3A2, SLC7A5, …

1.74E−4

Cellular components

GO:0043231

Intracellular membrane-bounded organelle

370

CCND1, COL1A2, EEF1A2, GADD45A, …

5.07E−06

GO:0043227

Membrane-bounded organelle

371

CCND1, COL1A2, EEF1A2, GADD45A, …

5.19E−06

GO:0005622

Intracellular

448

AARS, CCND1, EEF1A2, GADD45A, …

3.09E−05

GO:0044424

Intracellular part

443

AARS, CCND1, EEF1A2, GADD45A, …

4.49E−05

 

GO:0005737

Cytoplasm

346

AARS, CD9, CCND1, EEF1A2, …

8.23E−05