Skip to main content

Table 3 Gene ontology analysis of differentially expressed genes in E-group and S-group according to BP, CC and MF

From: Bioinformatics analysis of differentially expressed genes in subchondral bone in early experimental osteoarthritis using microarray data

ONTOLOGY

Description

P value

P adjust

gname

BP

Ribosomal subunit export from nucleus

0.000659

0.43601

RASL2-9/SDAD1/ZFP593/RPS15

BP

Ribosome localization

0.000659

0.43601

RASL2-9/SDAD1/ZFP593/RPS15

BP

Regulation of hemopoiesis

0.000698

0.43601

ADRM1/LEO1/CSF1/HMGB2/CALCA/RARA/ITPKB/NFE2L2/MEIS2/ERBB2/IHH/GPR171/INHBA/TNFSF9/PPP2R3C/MIXL1/HIST2H4/GNAS/IL1F8/ZAP70/RGD1309676

BP

Negative regulation of hemopoiesis

0.001031

0.43601

LEO1/CALCA/RARA/ITPKB/NFE2L2/MEIS2/ERBB2/IHH/GPR171/MIXL1/HIST2H4

BP

rRNA-containing ribonucleoprotein complex export from nucleus

0.001063

0.43601

RASL2-9/SDAD1/ZFP593/RPS15

BP

Hair follicle development

0.001079

0.43601

SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/PRSS8

BP

Molting cycle

0.001083

0.43601

SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/ARNTL/PRSS8

BP

Hair cycle

0.001083

0.43601

SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/ARNTL/PRSS8

BP

Molting cycle process

0.001245

0.43601

SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/PRSS8

BP

Hair cycle process

0.001245

0.43601

SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/PRSS8

CC

Cytosolic small ribosomal subunit

0.000355

0.163784

LOC297756/RPS7/RPS26/RPS27A/RGD1565117/RGD1562381/RPS15/RGD1559808

CC

Nuclear speck

0.002082

0.276812

SURF2/EP400/SRSF2/PACSIN2/GLYR1/BASP1/KIF22/SNRPB2/MORF4L1/SMC4/CKAP4/TCF3/NR3C1/HSPB3/HSPA1B/CDK12/CNOT7/EAF2

CC

Blood microparticle

0.002809

0.276812

ACTC1/CPN2/HBE1/PRSS1/HSPA1B/ACTG2/PROS1/HSPA1L/SERPINF2

CC

Small ribosomal subunit

0.002991

0.276812

LOC297756/RPS7/RPS26/RPS27A/RGD1565117/RGD1562381/RPS15/RGD1559808

CC

Cytosolic ribosome

0.003002

0.276812

LOC297756/RPL34/RPS7/LOC306079/RPS26/SURF6/RPS27A/RGD1565117/RGD1562381/RPS15/RGD1559808

CC

Autophagosome membrane

0.003616

0.27785

RAB7A/LAMP2/STX17/PRKD1

CC

Nuclear chromatin

0.004689

0.308812

EP400/ARID1A/RBMXRTL/SFR1/HMGB2/RARA/CBX5/SMARCA5/MORF4L1/PSIP1/TCF3/RUNX2/MIXL1/ETV3/HIST2H4/HIST1H1A/MXD1/HIST1H1B

CC

Autophagosome

0.016393

0.669112

FTH1/RAB7A/LAMP2/STX17/PRKD1/ATG12

CC

DNA packaging complex

0.016574

0.669112

HIST2H2BE/GLYR1/SMC4/TCF3/HIST2H4/HIST1H1A/HIST1H1B

CC

Lateral plasma membrane

0.016808

0.669112

VANGL2/NSG1/PKD1/FGF13/GJB2

MF

Repressing transcription factor binding

0.00545

0.759982

CBX5/TCF3/RUNX2/RBPJ/MIXL1/ARNTL

MF

Structural constituent of ribosome

0.006363

0.759982

LOC297756/RPL34/RGD1564617/RPS7/RGD1562397/LOC306079/RPS26/RPS27A/RGD1565117/LOC100360679/RGD1562381/RPS15/MRPL3/RGD1559808

MF

RNA polymerase II core promoter proximal region sequence-specific DNA binding

0.00642

0.759982

NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/GMEB2/SOX6/RBPJ/HIVEP2/NKX6-1/MIXL1/PITX3/BCL11B/FOXS1/PAX1/MXD1/CRX

MF

Transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding

0.008708

0.759982

NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/SOX6/RBPJ/HIVEP2/NKX6-1/MIXL1/PITX3/BCL11B/FOXS1/PAX1/MXD1/ARNTL/CRX

MF

Core promoter proximal region sequence-specific DNA binding

0.008925

0.759982

NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/GMEB2/SOX6/RBPJ/HIVEP2/NKX6-1/MIXL1/PITX3/BCL11B/FOXS1/PAX1/MXD1/CRX

MF

Core promoter proximal region DNA binding

0.009372

0.759982

NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/GMEB2/SOX6/RBPJ/HIVEP2/NKX6-1/MIXL1/PITX3/BCL11B/FOXS1/PAX1/MXD1/CRX

MF

Manganese ion binding

0.011064

0.759982

GLUL/XPNPEP1/IMPA1/ARG1/TDP2

MF

Transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding

0.011141

0.759982

NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/RBPJ/HIVEP2/MIXL1/PITX3/BCL11B/PAX1/CRX

MF

Histone binding

0.011785

0.759982

CKS2/GLYR1/HMGB2/PHF1/CBX5/SMARCA5/USP15/ING1/ATAD2/HIST2H4/RAG2

MF

Methylated histone binding

0.016167

0.759982

GLYR1/PHF1/CBX5/ING1/RAG2