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Table 3 Gene ontology analysis of differentially expressed genes in E-group and S-group according to BP, CC and MF

From: Bioinformatics analysis of differentially expressed genes in subchondral bone in early experimental osteoarthritis using microarray data

ONTOLOGY Description P value P adjust gname
BP Ribosomal subunit export from nucleus 0.000659 0.43601 RASL2-9/SDAD1/ZFP593/RPS15
BP Ribosome localization 0.000659 0.43601 RASL2-9/SDAD1/ZFP593/RPS15
BP Regulation of hemopoiesis 0.000698 0.43601 ADRM1/LEO1/CSF1/HMGB2/CALCA/RARA/ITPKB/NFE2L2/MEIS2/ERBB2/IHH/GPR171/INHBA/TNFSF9/PPP2R3C/MIXL1/HIST2H4/GNAS/IL1F8/ZAP70/RGD1309676
BP Negative regulation of hemopoiesis 0.001031 0.43601 LEO1/CALCA/RARA/ITPKB/NFE2L2/MEIS2/ERBB2/IHH/GPR171/MIXL1/HIST2H4
BP rRNA-containing ribonucleoprotein complex export from nucleus 0.001063 0.43601 RASL2-9/SDAD1/ZFP593/RPS15
BP Hair follicle development 0.001079 0.43601 SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/PRSS8
BP Molting cycle 0.001083 0.43601 SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/ARNTL/PRSS8
BP Hair cycle 0.001083 0.43601 SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/ARNTL/PRSS8
BP Molting cycle process 0.001245 0.43601 SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/PRSS8
BP Hair cycle process 0.001245 0.43601 SAV1/VANGL2/LHX2/GAL/INHBA/RBPJ/GNAS/LGR4/PRSS8
CC Cytosolic small ribosomal subunit 0.000355 0.163784 LOC297756/RPS7/RPS26/RPS27A/RGD1565117/RGD1562381/RPS15/RGD1559808
CC Nuclear speck 0.002082 0.276812 SURF2/EP400/SRSF2/PACSIN2/GLYR1/BASP1/KIF22/SNRPB2/MORF4L1/SMC4/CKAP4/TCF3/NR3C1/HSPB3/HSPA1B/CDK12/CNOT7/EAF2
CC Blood microparticle 0.002809 0.276812 ACTC1/CPN2/HBE1/PRSS1/HSPA1B/ACTG2/PROS1/HSPA1L/SERPINF2
CC Small ribosomal subunit 0.002991 0.276812 LOC297756/RPS7/RPS26/RPS27A/RGD1565117/RGD1562381/RPS15/RGD1559808
CC Cytosolic ribosome 0.003002 0.276812 LOC297756/RPL34/RPS7/LOC306079/RPS26/SURF6/RPS27A/RGD1565117/RGD1562381/RPS15/RGD1559808
CC Autophagosome membrane 0.003616 0.27785 RAB7A/LAMP2/STX17/PRKD1
CC Nuclear chromatin 0.004689 0.308812 EP400/ARID1A/RBMXRTL/SFR1/HMGB2/RARA/CBX5/SMARCA5/MORF4L1/PSIP1/TCF3/RUNX2/MIXL1/ETV3/HIST2H4/HIST1H1A/MXD1/HIST1H1B
CC Autophagosome 0.016393 0.669112 FTH1/RAB7A/LAMP2/STX17/PRKD1/ATG12
CC DNA packaging complex 0.016574 0.669112 HIST2H2BE/GLYR1/SMC4/TCF3/HIST2H4/HIST1H1A/HIST1H1B
CC Lateral plasma membrane 0.016808 0.669112 VANGL2/NSG1/PKD1/FGF13/GJB2
MF Repressing transcription factor binding 0.00545 0.759982 CBX5/TCF3/RUNX2/RBPJ/MIXL1/ARNTL
MF Structural constituent of ribosome 0.006363 0.759982 LOC297756/RPL34/RGD1564617/RPS7/RGD1562397/LOC306079/RPS26/RPS27A/RGD1565117/LOC100360679/RGD1562381/RPS15/MRPL3/RGD1559808
MF RNA polymerase II core promoter proximal region sequence-specific DNA binding 0.00642 0.759982 NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/GMEB2/SOX6/RBPJ/HIVEP2/NKX6-1/MIXL1/PITX3/BCL11B/FOXS1/PAX1/MXD1/CRX
MF Transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding 0.008708 0.759982 NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/SOX6/RBPJ/HIVEP2/NKX6-1/MIXL1/PITX3/BCL11B/FOXS1/PAX1/MXD1/ARNTL/CRX
MF Core promoter proximal region sequence-specific DNA binding 0.008925 0.759982 NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/GMEB2/SOX6/RBPJ/HIVEP2/NKX6-1/MIXL1/PITX3/BCL11B/FOXS1/PAX1/MXD1/CRX
MF Core promoter proximal region DNA binding 0.009372 0.759982 NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/GMEB2/SOX6/RBPJ/HIVEP2/NKX6-1/MIXL1/PITX3/BCL11B/FOXS1/PAX1/MXD1/CRX
MF Manganese ion binding 0.011064 0.759982 GLUL/XPNPEP1/IMPA1/ARG1/TDP2
MF Transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding 0.011141 0.759982 NR4A3/LHX2/TCF3/NR3C1/ZFP384/ALS2CR8/MEIS2/RUNX2/RBPJ/HIVEP2/MIXL1/PITX3/BCL11B/PAX1/CRX
MF Histone binding 0.011785 0.759982 CKS2/GLYR1/HMGB2/PHF1/CBX5/SMARCA5/USP15/ING1/ATAD2/HIST2H4/RAG2
MF Methylated histone binding 0.016167 0.759982 GLYR1/PHF1/CBX5/ING1/RAG2