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Table 5 Significantly down-regulated genes in both bone and kidney (GZZSZTW vs. Blank)

From: Deciphering the potential pharmaceutical mechanism of Guzhi Zengsheng Zhitongwan on rat bone and kidney based on the “kidney governing bone” theory

Gene name

Bone

Kidney

Blank (FPKM)

GZZSZTW (FPKM)

log2 fold change (GZZSZTW/Blank)

p value

Blank (FPKM)

GZZSZTW (FPKM)

log2 fold change (GZZSZTW/Blank)

p value

Tripartite motif-containing protein 59 (Trim59)

63.96

30.75

− 1.06

4.41E−47

3.76

0.91

− 2.05

2.92E−11

Collagen alpha-2(VI) chain (Col6a2)

3.99

1.59

− 1.33

5.97E−07

6.90

1.73

− 2.00

3.15E−25

Lysyl oxidase homolog 1 (Loxl1)

2.55

0.87

− 1.55

2.63E−04

6.67

3.20

− 1.06

2.23E−07

Rano class II histocompatibility antigen, B alpha chain (Rt1ba)

16.32

4.02

− 2.02

1.59E−13

83.32

40.73

− 1.03

1.32E−30

72 kDa type IV collagenase (Mmp2)

4.72

1.68

− 1.49

6.19E−08

4.49

1.63

− 1.46

1.11E−09

Collagen alpha-1(V) chain (Col5a1)

1.84

0.38

− 2.28

1.27E−09

3.71

1.35

− 1.46

3.82E−21

Olfactomedin-like protein 3 (Olfml3)

6.31

0.48

− 3.72

2.17E−15

7.82

2.56

− 1.61

1.51E−10

Mono [ADP-ribose] polymerase PARP16 (Parp16)

4.18

1.65

− 1.34

4.41E−05

16.13

6.90

− 1.23

1.45E−20

Hemoglobin subunit beta-1 (Hbb1)

318449.91

105658.11

− 1.59

0

1173.62

298.69

− 1.97

0

Aryl hydrocarbon receptor nuclear translocator-like protein 1 (Arntl)

1.55

0.06

− 4.69

2.94E−08

12.17

1.14

− 3.42

2.01E−60

Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A (Apobec3a)

0.76

0.17

− 2.16

1.95E−04

2.11

1.00

− 1.08

4.95E−06

Hemoglobin subunit beta-2 (Hbb2)

25744.68

10685.16

− 1.27

0

107.40

24.59

− 2.13

2.24E−56

Galectin-5 (Lgals5)

619.97

306.05

− 1.02

2.49E−117

5.43

1.47

− 1.89

8.97E−05

Mitochondrial fission regulator 1 (Mtfr1)

9.27

2.99

− 1.63

4.01E−06

22.05

10.25

− 1.11

1.90E−09

Solute carrier organic anion transporter family member 2B1 (Slco2b1)

3.18

1.00

− 1.67

6.28E−08

3.65

1.07

− 1.77

3.73E−13

Macrophage-expressed gene 1 protein (Mpeg1)

22.34

9.15

− 1.29

1.29E−32

4.09

1.94

− 1.08

5.11E−08

Insulin-like growth factor-binding protein 4 (Igfbp4)

22.16

10.42

− 1.09

7.73E−15

80.24

20.72

− 1.95

6.94E−157

Decorin (Dcn)

56.87

19.21

− 1.57

2.30E−45

87.18

20.12

− 2.12

4.97E−145

Calcipressin-1 (Rcan1)

6.83

3.03

− 1.17

5.07E−06

46.91

23.12

− 1.02

1.38E−33

Phosphoserine aminotransferase (Psat1)

6.86

2.84

− 1.27

2.21E−06

191.68

64.45

− 1.57

9.36E−259

Selenoprotein P (Sepp1)

118.47

23.76

− 2.32

1.56E−194

1943.71

875.64

− 1.15

0

Coronin-1C (Coro1c)

4.42

0.61

− 2.86

1.71E−07

13.29

5.98

− 1.15

1.06E−08

Collagen alpha-1(I) chain (Col1a1)

198.95

66.96

− 1.57

0

7.51

1.09

− 2.78

1.51E−64

DNA damage-inducible transcript 4 protein (Ddit4)

7.25

2.05

− 1.82

7.97E−09

43.56

21.42

− 1.02

3.31E−26

Endoglin (Eng)

3.61

0.85

− 2.09

6.83E−09

36.46

17.26

− 1.08

4.64E−41

Monocarboxylate transporter 1 (Slc16a1)

40.94

18.51

− 1.15

2.32E−32

56.75

5.62

− 3.34

1.52E−236

Slit homolog 3 protein (Slit3)

1.32

0.28

− 2.24

8.69E−07

2.19

1.02

− 1.10

6.17E−06

Hephaestin (Heph)

2.31

0.85

− 1.44

1.15E−05

3.50

1.56

− 1.17

8.10E−09

Caspase-4 (Casp4)

6.86

2.71

− 1.34

9.64E−05

5.85

2.47

− 1.24

9.73E−05

Carboxypeptidase Q (Cpq)

7.40

1.89

− 1.97

1.29E−09

136.94

65.28

− 1.07

3.24E−93

Aurora kinase B (Aurkb)

14.57

6.47

− 1.17

1.52E−09

0.77

0.01

− 6.27

2.34E−04

Complement C1q tumor necrosis factor-related protein 6 (C1qtnf6)

2.76

0.50

− 2.46

5.54E−07

1.31

0.29

− 2.18

1.81E−04

Glia-derived nexin (Serpine2)

85.20

34.85

− 1.29

1.67E−60

8.47

1.53

− 2.47

1.82E−22

A disintegrin and metalloproteinase with thrombospondin motifs 2 (Adamts2)

1.28

0.27

− 2.25

5.20E−08

1.02

0.26

− 1.97

3.48E−05

Glutathione peroxidase 3 (Gpx3)

186.91

71.69

− 1.38

5.73E−109

12320.88

4891.04

− 1.33

0

Arachidonate 15-lipoxygenase (Alox15)

34.62

13.20

− 1.39

2.33E−32

1.61

0.10

− 4.01

6.27E−08

Insulin-like growth factor-binding protein 3 (Igfbp3)

5.44

2.70

− 1.01

1.45E−04

64.08

16.86

− 1.93

9.00E−137

Collagen alpha-1(III) (Col3a1)

18.19

4.02

− 2.18

3.35E−68

17.97

2.29

− 2.97

6.13E−133

Osteomodulin (Omd)

7.34

0.75

− 3.29

1.52E−16

3.64

1.41

− 1.37

9.08E−05