Skip to main content

Table 1 Oligonucleotides used for gene expression analysis

From: Chondrogenic differentiation of human subchondral progenitor cells is affected by synovial fluid from donors with osteoarthritis or rheumatoid arthritis

Gene name

Gene symbol

Oligonuclotides (5'→3') (Up/Down)

Product size (Base Pairs)

Glyceraldehyd-3-Phosphate dehydrogenase

GAPDH

GGC GAT GCT GGC GCT GAG TAC/TGG TCC ACA CCC ATG ACG A

149

Aggrecan

AGC1

CCA GTG CAC AGA GGG GTT TG/TCC GAG GGT GCC GTG AG

146

Cartilage oligomeric matrix protein

COMP

GGG TGG CCG CCT GGG GGT CTT/CTT GCC GCA GCT GAT GGG TCT C

116

Link-protein

LINK

GCG TCC GCT ACC CCA TCT CTA/GCG CTC TAA GGG CAC ATT CAG TT

145

Type IIα1 collagen

COL2A1

CCG GGC AGA GGG CAA TAG CAG GTT/CAA TGA TGG GGA GGC GTG AG

128

Type IXα1 collagen

COL9A1

AAT CAG GCT CTG AAG CTC ATA AAA/CCT GCC ACA CCC CCG CTC CTT CAT

100

Matrix metalloproteinase 1

MMP1

TAC ATG CGC ACA AAT CCC TTC TAC C/GAA AAA CCG GAC TTC ATC TCT GTC G

126

Matrix metalloproteinase 2

MMP2

TCC CTG CCC CTC CCT TCA AC/CCT TTC CAG CAG ACA CCA TCA CC

196

Matrix metalloproteinase 13

MMP13

CAA AAA CGC CAG ACA AAT GTG ACC/GAT GCA GGC GCC AGA AGA ATC T

105

Tissue inhibitor of metalloproteinases 1

TIMP1

GGC TTC TGG CAT CCT GTT GTT G/ACG CTG GTA TAA GGT GGT CTG GTT G

160

Tissue inhibitor of metalloproteinases 2

TIMP2

CTA GGG CAG ACT GGG AGG GGG AGG GTA TC/TGG AGG GGT CTG GTG GAG TTG TAT

143